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Annotate 3d scatter plot matplotlib
Annotate 3d scatter plot matplotlib





annotate 3d scatter plot matplotlib

The following solution (built on top of HYRY's answer) implements a mouse-over (pop-over) solution for data points in 3d charts. If you have many data points, the chart can get very cluttered if you annotate them all. M = rand(3,3) # m is an array of (x,y,z) coordinate tripletsĪx = fig.add_subplot(111, projection='3d')įor i in range(len(m)): # plot each point + it's index as text aboveĪx.text(x, y, z, '%s' % (label), size=20, zorder=1, color='k')Īnim = animation.FuncAnimation(fig, animate, frames=200, interval=50) Textcoords='offset points', ha='right',va='bottom') Segments =, xyzn) for s, t in edges]Īx.scatter(xn,yn,zn, marker='o', c = group, s = 64)Įdge_col = Line3DCollection(segments, lw=0.2)Īnnotate3D(ax, s=str(j), xyz=xyz_, fontsize=10, xytext=(-3,3), Using this function annotation tags can be added to Axes3d as in example bellow:įrom mpl_3d import Line3DCollection '''add anotation text s to to Axes3d ax''' Xs, ys, zs = proj_transform(xs3d, ys3d, zs3d, renderer.M)įurther, we can define the annotate3D() function: def annotate3D(ax, s, *args, **kwargs): Similarly Annotation3D class (inherited from Annotation) can be created: from mpl_3d import proj_transformĭef _init_(self, s, xyz, *args, **kwargs):Īnnotation._init_(self,s, xy=(0,0), *args, **kwargs) In the following posts, the plotting of 3D arrows in matplotlib is discussed. M=rand(3,3) # m is an array of (x,y,z) coordinate tripletsįor i in range(len(m)): #plot each point + it's index as text aboveĪx.scatter(m,m,m,color='b')Īx.text(m,m,m, '%s' % (str(i)), size=20, zorder=1, Maybe easier via ax.text(.): from matplotlib import pyplot

annotate 3d scatter plot matplotlib

Label.update_positions()įig.canvas.mpl_connect('button_release_event', update_position) Textcoords = 'offset points', ha = 'right', va = 'bottom',ībox = dict(boxstyle = 'round,pad=0.5', fc = 'yellow', alpha = 0.5),Īrrowprops = dict(arrowstyle = '->', connectionstyle = 'arc3,rad=0')) # now try to get the display coordinates of the first point import pylabĪx = fig.add_subplot(111, projection = '3d') If you need interactive with the figure, you can recalculate the location when mouse released. Calculate the 2D position of the point, and use it create the annotation.







Annotate 3d scatter plot matplotlib